All markers flagged as having no rules in AMRFinderPlus Escherichia coli output

[l-p-fernandes]

Hello!

I've been testing amrrules on some E. coli genomes, but for some reason that I just haven't been able to pinpoint all detected markers show up as having no applicable rules. I am using the latest versions of both amrrules and amrfinderplus, with the latest amrfinderplus database (changed on 15-05-2026). The only thing I can remember that I haven't tried is reverting the amrfinderplus database to an earlier version, but would this be enough to justify the lack of matching rules?

I'm sending a zip with both the amrfinderplus input and the corresponding amrrules for one of the genomes, hope it helps!

Thank you!

Kind regards,
Laura

11777_amrrules.zip

[natacha-couto]

Hey Laura, there aren't yet any rules for the detected genes, so the results look correct. Hopefully, we will release rules for acquired mechanisms later this year.